rs261211062 SNP Detail

Summary

• ID
  rs261211062
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71696409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTTGCC TCTGCCTCCC
  AAGTGCTGGG ATTAAAGGCG TGCACCACCA CTGCCTGGCT CTGAATCAAC TCTTAAAGGA
  GACAGTAAGA TGTGTCTCTA CCCAGGGCCA GAAGTAGAAC TAAGATTTCC ATTTTACTTG
  AGGAAGTAGC CTTCTCTTCA TTAGCCTAAA CAAAGCCCTG GTACTTCCTT TTTGTTTTTT
  K
  TTTGTTTTTT TTTCTTTTCT TTTCTTCATA TCGTATAAAG GGGCATTTGT AGAGCTTCCC
  TGTCTAGTGT TACCAGGAAA CAGGAGGTGT GGTTGATTCA CTGTGGCCTC CAGGGCTACT
  TCTGTATCAA AGGCCACCTG AACTCAAATT CTCAGGCCAT GCGCATTCAT ATTGGCTCAG
  GGTAAATTTG TCTTAAGTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354425566	MGP_WTSI_2_71704122	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261211062					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354425566	MGP_WTSI_2_71704122	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71696409 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	810 bp downstream
Rr370575	regulatory region 370575	476 bp upstream
Rr558852	regulatory region 558852	within coordinates
Rr558853	regulatory region 558853	335 bp proximal
Rr558854	regulatory region 558854	1477 bp proximal
Tssr18292	transcription start site region 18292	62 bp upstream
Tssr18293	transcription start site region 18293	1689 bp upstream
Tssr24499	transcription start site region 24499	1486 bp downstream