rs261095398 SNP Detail

Summary

• ID
  rs261095398
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67514433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTGGTG CACAGTGCCA
  ACTGCTGTCA TAGTTACTGC CATCATCATT GTATCCCTGC AAACTTCTCA GACGTCCACC
  AGCCTTTGCA GAGTTTGGTA CCTAGAATCT CCTTTTCTTT ATCTGTTTCA GTATACAATT
  GTGATTTTCT GCTCAACTCC TTGGTTACTT TCAGGAAGCT TTTTCTGATA CATCCCTCCC
  M
  CATCCACTCA GGAATATGTC TTTTGCTTTT ACTTCCTTAT TTTTTGCATC CTAGGATTAG
  CAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA ATTACCCTTC CTGGGTCTCT
  GTTGCCCAGA GTAAACTGGG TACATCAGTT TCTGGCTCTG TTTCTTAGAT TTTTTTTTTT
  TCCTGAGAAT CAAACTAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368651736	MGP_WTSI_6_67487443	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	C	A	A	A	A	C	C	A	A	A	A	C	C	A	C	C	A	A	C	A	C	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261095398					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	C	A	A	A	A	C	C	A	A	A	A	C	C	A	C	C	A	A	C	A	C	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368651736	MGP_WTSI_6_67487443	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67514433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	1573 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631670	regulatory region 631670	1643 bp distal
Rr631671	regulatory region 631671	1373 bp distal
Rr631672	regulatory region 631672	1470 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	1653 bp upstream
Tssr61257	transcription start site region 61257	1752 bp upstream
Tssr61258	transcription start site region 61258	1647 bp upstream
Tssr61259	transcription start site region 61259	1579 bp upstream