rs261042466 SNP Detail

Summary

• ID
  rs261042466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79959472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGCCAGAA CTGCCGTCTT TGACAGGCAT
  ATACTCTGCT CACATCACCA ACGCCCCCAC CACCACCAAC CCAAGCAGAC AGAGTATAAA
  CAGATGCTCT GACCTCACGG GAGCAATCCA CACATGTGAG CTGCTACTGT ACTACTGACC
  R
  ACTGCTCAGG CTATTTGCCA AGCAGCTCAT CTGCAACTGT TCCGTGCACA GAAGCACATC
  AGAATTTCTA CAGTTTACGA GCTCAATTAT GCACGAAAGA AACGTGAATG ACTTTCGCGC
  TCTACAAGAA GCTGAATTCC TCTCTAGCAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320362023	CHEV_2_79969285	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261042466					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79959472 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11847	CpG island 11847			within coordinates
Pde1a	phosphodiesterase 1A, calmodulin-dependent			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr373421	regulatory region 373421			1923 bp downstream
Rr560061	regulatory region 560061			within coordinates
Rr560062	regulatory region 560062			320 bp proximal
Tssr24917	transcription start site region 24917			132 bp upstream
Tssr24918	transcription start site region 24918			105 bp upstream
Tssr24919	transcription start site region 24919			within coordinates
Tssr24920	transcription start site region 24920			32 bp downstream
Tssr24921	transcription start site region 24921			55 bp downstream
Tssr24922	transcription start site region 24922			89 bp downstream
Tssr24923	transcription start site region 24923			116 bp downstream
Tssr24924	transcription start site region 24924			162 bp downstream
Tssr24925	transcription start site region 24925			407 bp downstream