rs261012968 SNP Detail

Summary

• ID
  rs261012968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151945905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACCCAAA GGGATGCAGG
  ATGGCTGGCT ATTCTGGGTC CTCAGCAGGA ACGTTCCCTG CTACCGGAGT TTACCTGATA
  CCCCTCATTG GTGTCTCCTT TCTCTAGCAC CTACAGGGGT CACCTCTGCT CTGTTCCTAA
  CAGAGTTTAC AACAGGTTCA AGCCCCAGGC TCTTTTAGAA TCTTACTGTC CCCTTCCCTT
  R
  GAGCCTGGGG AAAAATTTTA ATTTTAATTT TAATTTAAAA ATATTTTAAG GGGGAAAAAA
  ATCACTGTCC CTAGACTCAG TATGCAAAGA CAAAGAGCTT TTATTCTGCA GAAACAGCCA
  ACATGTGGGG GTCAACCATT CTCTAAAATG GGGACCCCAG ACAATGGCCT TCTCATAGGG
  AACCAGAGAA ACCCTCTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320562163	CHEV_2_151929721	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261012968					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151945905 () rs orientation: forward

Symbol	Name	Function Class
9230118N01Rik	RIKEN cDNA 9230118N01 gene	692 bp downstream
Cpgi12438	CpG island 12438	1023 bp proximal
Gm31475	predicted gene, 31475	821 bp upstream
Rr567286	regulatory region 567286	992 bp distal
Rr567287	regulatory region 567287	698 bp proximal
Rr567288	regulatory region 567288	1461 bp proximal
Rr567289	regulatory region 567289	1523 bp proximal
Rr567290	regulatory region 567290	1675 bp proximal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)	1531 bp upstream
Tssr20767	transcription start site region 20767	817 bp upstream
Tssr20768	transcription start site region 20768	929 bp upstream
Tssr20769	transcription start site region 20769	1737 bp upstream
Tssr26780	transcription start site region 26780	1382 bp downstream