rs261009530 SNP Detail

Summary

• ID
  rs261009530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113598906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTATTTT TAAATCATGT
  ATGTATGTTT GTTTGTGTAT GGGGGCGGGG GGGGGCTTGC ACATGTCTGT GGAGGTCAGA
  AGAGGGCATT GAACTCCCTA GACCTGGAGT GACAGGCAGT TGTGGGCCAC CTGATGTGGA
  TGCTGGGGAC TGAACTCAGG TCCTCAGAGC AGCACACTCT TTAACTACTA AGCCATTTCT
  Y
  TAGTCCATAA AACTGTATCT TCAACTGCTC CAAAAGCATG ACATAAACTT CTACTGTTCA
  GGGTGATTTA TTCGCCAGAC TTGATAAAGG AGCCTAAATG GAATTCAGAC ACCCTGCTTG
  ATTTTTTTCC TGGCTCATCT AGTCACCTTT CACATTCTTT GTTACAACCA AATAACACTG
  CTCCTCCGAG TTGTCCTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911128	CHEV_6_113571939	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261009530					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113598906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	1726 bp proximal
Rr636555	regulatory region 636555	1636 bp proximal
Tssr62461	transcription start site region 62461	1583 bp downstream