rs260985879 SNP Detail

Summary

• ID
  rs260985879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113054981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCCCCA GCCTGGTAGC
  AGGAAGATGC TTGCCCTTTT CGTCTTCTCA GCTACCTTTA CACACCATTG CACCGCTCTT
  GCCCAGAGAG AAAGGCTCTC CTTCATCTAG TCGACCCCAC TACCTTTTTA ATGTCTTCCC
  TGGGTCAGGA CTCTTCCCCT CCCCCTACTC TGGTCTCCCC TTTTTGCCTG GGTATTGCCT
  R
  CTCCACGTTT ATACCCTTTT CAGGAGAGGC CTCCCAACCC TGCTCTCAAA ATACACATAC
  TTTTTTTTCT GTCCCTGAGC CCCCCACCTC CCCTGTTCTT GCGGCCTTGT GACAACTCTG
  GTCGCTCGTG GGGGCCCAGT CCTCCCCTCC ATAATCTTCC TGAACGCCTC TCCTCTGGTT
  TTCCAGTTCC TATCTCAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369705680	MGP_WTSI_6_113028014	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260985879					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369705680	MGP_WTSI_6_113028014	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113054981 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17829	CpG island 17829			within coordinates
Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano			776 bp upstream
Rr379953	regulatory region 379953			within coordinates
Rr407325	regulatory region 407325			288 bp distal
Rr636449	regulatory region 636449			1633 bp distal
Rr636450	regulatory region 636450			773 bp distal
Rr636451	regulatory region 636451			697 bp distal
Rr636452	regulatory region 636452			371 bp distal
Rr636453	regulatory region 636453			within coordinates
Rr636454	regulatory region 636454			1428 bp proximal
Setd5	SET domain containing 5			Intron
				Noncoding-Transcript-Variant
Tssr58166	transcription start site region 58166			638 bp downstream
Tssr58167	transcription start site region 58167			618 bp downstream
Tssr58168	transcription start site region 58168			554 bp downstream
Tssr58169	transcription start site region 58169			397 bp downstream
Tssr58170	transcription start site region 58170			378 bp downstream
Tssr62428	transcription start site region 62428			1693 bp upstream
Tssr62429	transcription start site region 62429			817 bp upstream
Tssr62430	transcription start site region 62430			770 bp upstream