rs260966342 SNP Detail

Summary

• ID
  rs260966342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19372177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATCACAG ACCTCTATGA
  ATGAGGAAGT GAGTTAGACA AGACCTGAGG GTTGGGAAGA GGCCTTTCCT GAACGAGAGA
  CCCGGTACAG ATGTCTAGTG CATAAGTAGC TCCAAGATAG GGAGAGCCTA ATATCCAGAA
  GCAGGGCAGG CAGGCAAGCT CAGGCCACTG AAGGCCCTTG TTGGCCTGTT GGAGGACTTG
  Y
  GTTTTCTTCT GAACTATAAT GGAAAGCCAG TGCAATATTT ACATCTGTGC TTTGCAACAA
  ACTGGCATTC ATATCTAATT TATATATGTT TTAAAATGTC TCTGGCTATA GCTTTATAGA
  CAGTGGTTTC AAAATGGAAA TCTGAAGCAA GGAAATCTTC CTAATAGTTT TAAATATCCT
  GAAGGAGAGA TGAGAGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320678407	CHEV_3_19218013	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260966342					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19372177 () rs orientation: forward

Symbol	Name	Function Class
Gm66414	predicted gene, 66414	1203 bp downstream
Rr573974	regulatory region 573974	949 bp proximal