rs260953206 SNP Detail

Summary

• ID
  rs260953206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95405487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTGTTG TAAATAATTA
  GGTGCTACAT TGGGTCAGTT GTCTTTCCTT ACTGTCATGT TGGGTGTTGA TCCTTGGGCC
  TCATAATGTT AGGAAAGCCC ACCACCGCTG AGTCATGTTC CTCAACCCTC TTTTAGCTTT
  TTGTAAATTA CTTTTATCCT CCATTTAAGC AACTAGAATC TTTTTGTAAA GTTTATGTAT
  R
  TGAGTACACT ATCTCTGTCT TCAGACACAC CAGAAGAGGG TATCAGATCC CATTACAGAT
  GGTTTTGAGC CACCATGTGG TTGCTGGGAA TTGAACTTAG GACCTCTGGA AGAATAGGCA
  GTGCTTTTAA CTGCTGAGCC ATCTCCCTGG CCCTGTAGGG CATTTCTTAG TGGTTGATGG
  GAGAGAGCCC AGCTCACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358902171	MGP_WTSI_3_95302098	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	G	G	G	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260953206					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	G	G	G	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358902171	MGP_WTSI_3_95302098	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95405487 () rs orientation: forward

Symbol	Name	Function Class
Arnt	aryl hydrocarbon receptor nuclear translocator	936 bp downstream
Ctsk	cathepsin K	1080 bp upstream
Rr580952	regulatory region 580952	119 bp proximal
Rr580953	regulatory region 580953	956 bp proximal
Rr580954	regulatory region 580954	1465 bp proximal
Tssr30554	transcription start site region 30554	1441 bp downstream
Tssr30555	transcription start site region 30555	1041 bp upstream
Tssr30556	transcription start site region 30556	1047 bp upstream
Tssr30557	transcription start site region 30557	1080 bp upstream
Tssr30558	transcription start site region 30558	1097 bp upstream
Tssr30559	transcription start site region 30559	1616 bp upstream
Tssr30560	transcription start site region 30560	1680 bp upstream
Tssr30561	transcription start site region 30561	1715 bp upstream