rs260918688 SNP Detail

Summary

• ID
  rs260918688
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85432891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTTTATG TTTAATTATC
  TTAAAAATAA TTTTCTCTCG TCCTTTTCCT TTTGATCTTG TGTTGGTTTT TTTTTTTTAA
  TGTCGAGGTG TTTTTAAACG TTTTCTTCAG CCCTCCCACC GAAACCGAAC GACGAAACAA
  ATTTAAACCC CAGATTATCC TCGTCAACGC AGGAAAAAAG GCAAAACAAA AAAAAAAAAA
  M
  AAAAAAAAAA CCAACCAACC AAACCAACAA ACAAAAACCC AGAAAACTAT CAAAAAGGAA
  AACAAACAAA AAAAAAAACA AAAAAAAGGA AAACACTCAG CTTTCATCCC CGCTAAGGGC
  AGGGCAGGCC CAGTTCTTTT AGCGTCCCCA GAGCCGCGAG GACATTACAA CAAAAATAGA
  ATTTTTTTTC TTAATCTCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	ST/bJ
ss375404562	MGP_WTSI_8_87230161	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	A	A	A	A	A	A	C	A	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	ST/bJ
rs260918688					SNP	C	C	C	C	C	A	C	C	C	C	C	C	A	A	A	A	A	A	C	A	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404562	MGP_WTSI_8_87230161	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85432891 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lyl1	lymphoblastomic leukemia 1			1322 bp downstream
Nfix	nuclear factor I/X			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr368567	regulatory region 368567			1636 bp downstream
Rr666588	regulatory region 666588			1655 bp distal
Tssr82117	transcription start site region 82117			1124 bp upstream
Tssr82118	transcription start site region 82118			1087 bp upstream
Tssr82119	transcription start site region 82119			1060 bp upstream
Tssr82120	transcription start site region 82120			984 bp upstream
Tssr82121	transcription start site region 82121			435 bp upstream
Tssr82122	transcription start site region 82122			202 bp upstream
Tssr82123	transcription start site region 82123			53 bp upstream
Tssr82124	transcription start site region 82124			8 bp upstream
Tssr82125	transcription start site region 82125			49 bp downstream
Tssr82126	transcription start site region 82126			238 bp downstream