rs260904664 SNP Detail

Summary

• ID
  rs260904664
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108514260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGCTTC AGTTAGTCTG
  TGTGCTCTGA CAGAGGAAGT ATTTGCAACG ATGGGAAGTG CATGACTGGA TTGTGGGAGG
  ACCCGGGCAG ACGGTGCCTC ATAGCATTGG CATGTGAGAT GCCAGCAGCA AGCTGACTGA
  GGAAGGCGAA GAGGGATAGC AGACCCAGAG TGGCAGATGC CATGTGATAC CCACCCCCCC
  M
  CACACACACA CACACAACCA CACACATTCC CCACAGTGTA AACTCACTTA GAAACAGGAT
  GTCATGGTCA AGGATGGCTT TTCCAAAAAT GCAAGCCAGT GGCACGCTTT TGATCCTGAG
  TAGACTTTAG GGCAAGAGTC TGCAAATATG GCTAGATGCA TGGGTGACAG AACTTGTGGA
  TAACAAGCTA GTAATGGCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	RIIIS/J	SEA/GnJ	SM/J	SWR/J
ss369589244	MGP_WTSI_6_108487293	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	A	A	A	A	C	A	A	C	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	RIIIS/J	SEA/GnJ	SM/J	SWR/J
rs260904664					SNP	C	A	A	A	A	A	A	C	A	A	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369589244	MGP_WTSI_6_108487293	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108514260 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636129	regulatory region 636129	1761 bp distal
Rr636130	regulatory region 636130	within coordinates
Rr636131	regulatory region 636131	936 bp proximal