rs260899257 SNP Detail

Summary

• ID
  rs260899257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:31364030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCATGTCC CCGCCTTCCT
  CTGGGACTGC GGCCCGGAAA ACACCTCTCC TTTTTCCAAG GGCTCAATCC CAGGCCAAGA
  GCCCAGTTGC CCCCGTCAGG TGCGTGGATA GGCTTGGAGG ACAGGACGGG CCCCGCGACT
  GCGGAGACCT GGGAGGCCCA CACTGTCATC CCCAGCATCT TAGCCTCTCG CTCCCGCCGC
  R
  GCGGAGGCTG CGCCAGCCCG CGCTCCGCCT GCCGGCTCCC GCGAGTCCCC TCATCGAGGA
  TGCTACCGGG GGACCCATTC CCAGTGGAAG CCCGCGCGAC CCTGACCTCG CTCCTTGGTC
  TTTCCAGAGA TCCCCTTCCC GTAGGTCGCC CTCAACCTCC GCGCCATGTT CCCGCTTCCA
  CCCTGCAGGT GTCTGGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357438440	MGP_WTSI_3_31208803	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260899257					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357438440	MGP_WTSI_3_31208803	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31364030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13053	CpG island 13053	within coordinates
Gm15496	predicted gene 15496	within coordinates
Rr574907	regulatory region 574907	within coordinates
Rr574908	regulatory region 574908	487 bp proximal
Rr574909	regulatory region 574909	580 bp proximal
Slc7a14	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	Intron
Tssr32914	transcription start site region 32914	337 bp downstream
Tssr32915	transcription start site region 32915	365 bp downstream
Tssr32916	transcription start site region 32916	386 bp downstream
Tssr32917	transcription start site region 32917	468 bp downstream