rs260899184 SNP Detail

Summary

• ID
  rs260899184
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68402239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGGACT TGGTGTCTGC
  TCTGGAAGAC TATGAAGAGC CCTTCCCGGT CTACCAGAAG AAGGTGATTG ATGAGTGGGC
  TCCGGAGGAG GACGGGGAGG AGGAGGAAGA GGAGGACGAT CGAGGGTATC GGGATGACGG
  CTGTCCGGCC CGGGAGCCGG GGGACGTGAG CGCCAGGATC GGCAGCAGCG GCAGCGGGAG
  Y
  AGGAGCGCCG CCACCACCAT GCCGTCCCCG ATGCCTAACG GCAACCTCCA TCCGCACGAC
  CCTCAAGACC TCAGGCACAA TGGCAACGTG GTGGTAGCTG GCCGGCCGAA CGCCTCTCGG
  GTTCCCCGGC GACCCATCCA GAAGACCCAG CCTCCAGGGA GCCGGCGCGG AGGCCGAAAC
  CGGGCATCTG GGGGCCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358302079	MGP_WTSI_3_68298828	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260899184					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358302079	MGP_WTSI_3_68298828	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68402239 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13250	CpG island 13250			within coordinates
Iqschfp	Iqcj and Schip1 fusion protein			Coding-Synonymous
Rr375142	regulatory region 375142			1297 bp downstream
Rr578005	regulatory region 578005			688 bp distal
Rr578006	regulatory region 578006			786 bp distal
Rr578007	regulatory region 578007			734 bp distal
Rr578008	regulatory region 578008			568 bp proximal
Schip1	schwannomin interacting protein 1			Coding-Synonymous
				Intron
Tssr898	transcription start site region 898			674 bp downstream
Tssr29457	transcription start site region 29457			1636 bp downstream
Tssr29458	transcription start site region 29458			638 bp downstream
Tssr29459	transcription start site region 29459			611 bp downstream
Tssr29460	transcription start site region 29460			1214 bp upstream
Tssr33507	transcription start site region 33507			836 bp upstream