rs260855097 SNP Detail

Summary

• ID
  rs260855097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53882298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTGAAAC AATAGAGCTT
  AATCATTTTT TTTAAATAAT CAATCAAGCA AGATTCTTCT ACACTTATCA GCCCTGTTTT
  ACTAAGAATT AAGGAGAAAA TGGCTGAGTT TACTGTTATA ACAGCAACAT CATAAAAATT
  AGTAATATCT TCAACTGCAC TTATAAAATT ATGATGTTGA CAATTGTAAT CATATACATG
  Y
  ACTTCTAATC GAGGAACTGA ATGTCCTTCC TTTTGATAAT TAGCTTTAAG TGAGGTAGCA
  GAACAGAGTG TTTGTAGAAG GGGATGAAGG AGATTCAAGT TTTATCTGAG AAACAGGAGG
  TGGAGGCATT GGCAGGCTCA GTTTGGCCAG AAAACAGCAA GGCAACAGCT GTCATTTCCT
  CTGCTAAGAA CTAGAGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320770160	CHEV_3_53778799	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260855097					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53882298 () rs orientation: forward

Symbol	Name	Function Class
Gm64314	predicted gene, 64314	within coordinates
Rr397671	regulatory region 397671	225 bp upstream
Rr576760	regulatory region 576760	101 bp proximal