rs260796740 SNP Detail

Summary

• ID
  rs260796740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28076069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCGCCTG GGCTCGCCTT
  CCCGCACATT CCGTCCTCGC CGCCCCGCCC CACCCCGCCC TCCTTCCTTG GCCCTGTGGG
  GACGGAAACA TCCCGTTCCT GCCCGAGCTG GGTCAAGAGC CGGAGGGACA GGACCAGAGC
  ACCCCTTACG CCAGAACTAG CTCTCCTTGT TCCTACTGGG TGACCTCATC TCGCCACGCC
  Y
  CCTCAGGTGA ACACCCGGGC TGGTAACGTC ACTTCCTGCC AGGTAAGCGC CCCCAGGCAG
  CACTGCTCAC GGAAAGGTCT GGAGGTCAGT TTACCCACCA TCACAAGGCT GTGAGCCGCG
  AAAAAGACAA ATTTCATCTC AGTTCACACT CAAGATTTTA TTTAAAAATT CCAACCCCCC
  CCAAAAAATA GACTTGTACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858504	MGP_WTSI_7_29161663	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260796740					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858504	MGP_WTSI_7_29161663	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28076069 () rs orientation: forward

Symbol	Name	Function Class
Gm73785	predicted gene, 73785	within coordinates
Gm73803	predicted gene, 73803	1072 bp upstream
Rr380568	regulatory region 380568	within coordinates
Rr400209	regulatory region 400209	712 bp downstream
Rr644238	regulatory region 644238	582 bp distal
Rr644239	regulatory region 644239	20 bp proximal
Rr644240	regulatory region 644240	1289 bp proximal
Rr644241	regulatory region 644241	1846 bp proximal
Tssr65460	transcription start site region 65460	852 bp downstream
Tssr65461	transcription start site region 65461	81 bp downstream
Tssr65462	transcription start site region 65462	82 bp upstream
Tssr65463	transcription start site region 65463	842 bp upstream
Tssr65464	transcription start site region 65464	1352 bp upstream
Tssr71489	transcription start site region 71489	1060 bp upstream
Tssr71490	transcription start site region 71490	326 bp downstream
Tssr71491	transcription start site region 71491	430 bp downstream
Tssr71492	transcription start site region 71492	486 bp downstream
Tssr71493	transcription start site region 71493	530 bp downstream
Tssr71494	transcription start site region 71494	577 bp downstream
Tssr71495	transcription start site region 71495	622 bp downstream
Tssr71496	transcription start site region 71496	973 bp downstream
Tssr71497	transcription start site region 71497	1221 bp downstream
Tssr71498	transcription start site region 71498	1279 bp downstream
Tssr71499	transcription start site region 71499	1372 bp downstream
Tssr71500	transcription start site region 71500	1405 bp downstream
Tssr71501	transcription start site region 71501	1423 bp downstream
Tssr71502	transcription start site region 71502	1463 bp downstream
Tssr71503	transcription start site region 71503	1499 bp downstream
Tssr71504	transcription start site region 71504	1527 bp downstream
Tssr71505	transcription start site region 71505	1543 bp downstream
Tssr71506	transcription start site region 71506	1562 bp downstream
Tssr71507	transcription start site region 71507	1603 bp downstream
Tssr71508	transcription start site region 71508	1625 bp downstream
Tssr71509	transcription start site region 71509	1663 bp downstream
Tssr71510	transcription start site region 71510	1742 bp downstream
Tssr71511	transcription start site region 71511	1781 bp downstream
Tssr71512	transcription start site region 71512	1836 bp downstream
Zfp36	zinc finger protein 36	139 bp downstream