rs260780240 SNP Detail

Summary

• ID
  rs260780240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87702402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACCCCGC ACCCCTCCCC
  CGAACGACAC ACACTCACAG CTCCGTCAGG TTCCCGGCGC CCCGCAGGCC GCGGAGGGTA
  TCCAGGGACC CTGCCCTGGT GCAGCGCAGC CCCGAGGGGC CCACGGGACA GCAGACCTCG
  CGACAGGATG CGGCGGAGGC ACAGGCCAGC ATCAACGAAG TCATCAGACT GCCTAGCCCC
  R
  CGGCCGGGCG ATGCCAGCCC AGCTGCCCGA GCCGCTGGCC TCGCAGCATC GCGGCGGCGC
  CCGCCTTGCT CGGGCCGCGC AGCCGTCCGT GCGCTCCTAG CTGCCGCCGC CCGGCCTCGC
  GCGACACGTG CGCGGGGCGG TGTTAAAGAC TAGCCACCAG GAGAGGGCGG CACCCACGGC
  CCCGCCCCGC CCCGCCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358784053	MGP_WTSI_3_87599017	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260780240					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358784053	MGP_WTSI_3_87599017	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87702402 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13339	CpG island 13339	within coordinates
Cpgi13340	CpG island 13340	1716 bp proximal
Insrr	insulin receptor-related receptor	1856 bp upstream
Ntrk1	neurotrophic tyrosine kinase, receptor, type 1	Coding-NonSynonymous
Rr579548	regulatory region 579548	57 bp proximal
Rr579549	regulatory region 579549	153 bp proximal
Rr579550	regulatory region 579550	646 bp proximal
Rr579551	regulatory region 579551	1366 bp proximal
Tssr29830	transcription start site region 29830	1794 bp upstream
Tssr29831	transcription start site region 29831	1843 bp upstream
Tssr33956	transcription start site region 33956	111 bp downstream