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rs260776261 SNP Detail
Summary
  • ID
    rs260776261
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:131871359 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTAAACTCT GAAACCCAAA
    GGGAACTGGG TTCGCCGCGG GTTGGAGATG TGGTCCCCGC CCGGGGAGCC AGAGTGCGCA
    CAACAGTCCG ACCCTCCCCT AAGCTCTACA GGCCTGCACC TGCTATCTCG CTTCACCTCT
    CCAGGGAGTT CGGGGACACC CTGCTCTGGG GATGGGGGCA ATTTCCTGCC ACTGCACTTA
    R
    TGTCGACCTC AGAAAAGATC TTAAGGGGTC AGAGCCGCAG CATGAGCTCC AGGCCACAAC
    TTTCTACCCG GGGAAAAGGA GTGGGCTGGG GCGCCCGCCT GCGCTGCTTC TGGGGCAGCC
    CGCATATCTA AGCCCACCTT GTGGCTTGGG TGGCAAAAGG GGACAGGGAA GAGTCAGGGA
    CCGGACCAGG CTGGCCACGG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss355696526 MGP_WTSI_2_131855175 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260776261 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss355696526 MGP_WTSI_2_131855175 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:131871359 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12299 CpG island 12299 within coordinates
Gm31179 predicted gene, 31179 1012 bp upstream
Gm75461 predicted gene, 75461 547 bp upstream
Rassf2 Ras association (RalGDS/AF-6) domain family member 2 Intron
Rr367316 regulatory region 367316 within coordinates
Rr397324 regulatory region 397324 466 bp upstream
Rr565378 regulatory region 565378 1689 bp distal
Rr565379 regulatory region 565379 944 bp distal
Rr565380 regulatory region 565380 57 bp proximal
Rr565381 regulatory region 565381 605 bp proximal
Tssr20292 transcription start site region 20292 1755 bp downstream
Tssr20293 transcription start site region 20293 1085 bp downstream
Tssr20294 transcription start site region 20294 541 bp upstream
Tssr26436 transcription start site region 26436 255 bp upstream
Tssr26437 transcription start site region 26437 234 bp upstream
Tssr26438 transcription start site region 26438 349 bp downstream
Tssr26439 transcription start site region 26439 369 bp downstream
Tssr26440 transcription start site region 26440 376 bp downstream
Tssr26441 transcription start site region 26441 385 bp downstream
Tssr26442 transcription start site region 26442 406 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory