rs260744209 SNP Detail

Summary

• ID
  rs260744209
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137858212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCCTTC AAATCATATA
  ACCTCTAAGG AAATTCTAGA CTTCTCTCAG CAAAAAAGGT GCAGGCAGGG TAAGAGGTGA
  GTGGGGGAGG GGGAGAGGGT GGGATGTGAT AGAAATACTC TATAATAGAC ATTAACCCCT
  GGGGGGAGGG GAGAAGGTGG GATGTGATGG GAATACCCTA TAATAGACAT TAACCCCTGG
  T
  GGGAGGGTGG GATGTGATGG AAATACTCTG TAATAGACAT TAACCCCTGG GGGGAGGGAA
  GAGGGTGGGA TGTGATGGAA ATACCCTATA ATAGACATTA ACCCCTGGGG GGAGGGGAGA
  GGGTGGGATG TGATGGAAAT ACTCTATAAT AGACATTAAC CCCTGGGGGG AGGGGAGAGG
  GTGGGATGTG ATGGAAATAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	SEA/GnJ
ss363432710	MGP_WTSI_4_137686816	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	SEA/GnJ
rs260744209					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363432710	MGP_WTSI_4_137686816	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137858212 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	Intron
Rr602841	regulatory region 602841	814 bp distal
Rr602842	regulatory region 602842	627 bp distal
Rr602843	regulatory region 602843	353 bp proximal