rs260722678 SNP Detail

Summary

• ID
  rs260722678
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120896245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTAATTGG CTCCAATTTC
  TGAATCTTAC ATTGTAAAGT TACAAAGACT TGGGTAGAAC CGAAAAACAA ATGTACAATA
  TTCATCTTGT TACCCATCTC ATTATGAGAT GTGTTTGCTC TCTACCTCTA GCGAGGACAG
  GTCTGATCTG CTGAACTGTT TGTTCCTGCG AACAATATTT TCATATCCTG CTTCCTTTTT
  W
  AAAAAAAAAA TCTAGTGATA TAAATACATT TTTCCCAAAT AACCCTTCTC TAACTCCAAA
  ACATCACAGA GCGTACTCCT TCAGCCTCTG TAACACGTGC GTTATCTGTG CATGCCTGAG
  CCACACGGTA ACCACTTTGT GTGCTCTCCC ACCCAGGGAA AGATACAACT GAGGAGAAAG
  GATGCCGAGA GGTTGCTTCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
ss359465145	MGP_WTSI_3_120805514	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	T	T	T	T	T	A	A	A	A	T	T	T	A	A	A	T	A	T	A	T	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
rs260722678					SNP	T	A	T	T	T	T	T	A	A	A	A	T	T	T	A	A	A	T	A	T	A	T	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359465145	MGP_WTSI_3_120805514	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120896245 () rs orientation: forward

Symbol	Name	Function Class
Gm65499	predicted gene, 65499	within coordinates
Rr584003	regulatory region 584003	124 bp distal
Rr584004	regulatory region 584004	1920 bp proximal