rs260684547 SNP Detail

Summary

• ID
  rs260684547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137574332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGATGAT TCCTAAATAG
  TGTCTGGTTT GATATGGCAC CGTAAGTACC CGCAAGTTCG GTACATCGCT AAAGAGTAGG
  CTATGGACTT ACCCTACTTT AATTCACCTT ATTCATTGTC TAACTCTACA GTCAACACAA
  CACTCACAAA GCGCCACGAG TTGTGCCTAG TATTTTATAT GCCCCTCTTA TTCCTCAGAA
  R
  AGTACCGTGT TATTTGACCA TGTGCAGAAA CTTTTGCCAA ATGAATGAAT GAATGAATGA
  AATGAATGAA AATACCTTGC CCAAGGTCGT ATAGGAATGG GCAAAGTCAT AATAGGCACT
  GAGTTTTAAT CTCTACAAGG CCTTTACTAC CGTTTTTTGG TTTTGTCTTT TTTTTTTTTT
  CCCATGCCCA TAGGATGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359894965	MGP_WTSI_3_137531535	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260684547					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359894965	MGP_WTSI_3_137531535	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137574332 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13867	CpG island 13867	187 bp distal
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14	Intron
H2az1	H2A.Z variant histone 1	1649 bp downstream
Rr586006	regulatory region 586006	886 bp distal
Rr586007	regulatory region 586007	795 bp distal
Rr586008	regulatory region 586008	889 bp proximal
Tssr31918	transcription start site region 31918	774 bp downstream
Tssr31919	transcription start site region 31919	737 bp downstream
Tssr31920	transcription start site region 31920	695 bp downstream
Tssr31921	transcription start site region 31921	658 bp downstream
Tssr31922	transcription start site region 31922	607 bp downstream
Tssr31923	transcription start site region 31923	502 bp downstream
Tssr31924	transcription start site region 31924	454 bp downstream
Tssr31925	transcription start site region 31925	442 bp downstream