rs260681317 SNP Detail

Summary

• ID
  rs260681317
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:150588643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGAAAG GCGACAAGCC
  ATTAGCAGAG ACGAAGGAAG CTCCAACTGC GGAGAAAAGC CAGGTTCCCG GAAAGAGCCC
  CCACCTCGGC CACATGCTCC CATGTCCTCA ATCTAACGTC AAGAGCCAAC CAAGCAAGTG
  CAGCAGGGTG GACCGACGTC GTCAGCGCCC TACCTGCCGG GCCCCCAAGG CCTCCTGACC
  S
  GGGGCGGGCT GCCAGGCCAG GGGCGCTCCG GCTTCTCCGT CCCTAAGGAA AACGTCAAGA
  TCCCTTCTAA GAATCCGGGG AGGTCCCGAA GGCTGACAGG CTTCTCTTGG GGCTTCCACG
  CTCGCAGTGA GGCGAGAGCT GTGTCAAAGC CGGAGGTGCA GGCGCCAGCC GTTCGCTCAG
  ACGAAACCGG AAATACCTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367187088	MGP_WTSI_5_151467753	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	C	G	G	G	C	C	C	G	G	G	G	C	G	G	C	G	G	G	C	G	G	G	G	C	G	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260681317					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	C	G	G	G	C	C	C	G	G	G	G	C	G	G	C	G	G	G	C	G	G	G	G	C	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367187088	MGP_WTSI_5_151467753	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150588643 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17110	CpG island 17110			within coordinates
Gm71525	predicted gene, 71525			85 bp upstream
N4bp2l2	NEDD4 binding protein 2-like 2			Intron
				mRNA-UTR
Rr399543	regulatory region 399543			466 bp upstream
Rr625784	regulatory region 625784			within coordinates
Rr625785	regulatory region 625785			96 bp proximal
Rr625786	regulatory region 625786			410 bp proximal
Rr625787	regulatory region 625787			424 bp proximal
Rr625788	regulatory region 625788			689 bp proximal
Rr625789	regulatory region 625789			1217 bp proximal
Tssr49954	transcription start site region 49954			119 bp upstream
Tssr54667	transcription start site region 54667			34 bp downstream
Tssr54668	transcription start site region 54668			137 bp downstream
Tssr54669	transcription start site region 54669			239 bp downstream
Tssr54670	transcription start site region 54670			382 bp downstream