rs260657917 SNP Detail

Summary

• ID
  rs260657917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150173179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAT TACCTGCACT TTCTTAGACG
  Y
  TTTTAAAAAA GATTTATTCA TTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321428029	CHEV_4_149462831	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260657917					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150173179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15345	CpG island 15345	221 bp distal
Gpr157	G protein-coupled receptor 157	Intron
Rr398878	regulatory region 398878	1290 bp downstream
Rr605172	regulatory region 605172	1347 bp distal
Rr605173	regulatory region 605173	988 bp distal
Rr605174	regulatory region 605174	652 bp distal
Rr605175	regulatory region 605175	335 bp proximal
Tssr40369	transcription start site region 40369	1181 bp downstream
Tssr40370	transcription start site region 40370	1053 bp downstream