rs260652671 SNP Detail

Summary

• ID
  rs260652671
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145124707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCAAGAG TCCAATCCAC
  ACTTTTCCAC TGGACACTGG CATACTTTCT CCATGGTGAA CTATATCTTT AACTAAGAGC
  CAAAATAAAT CTTCTACCAC TTTAGTTGCT TTCTGTCATG TACTTGGTCA TATGAATGAG
  GGAAACATTA CTCAGGTCCC AAGTTAATTT TTCCATGCCA CATTTTATTT ATGCTATGTA
  S
  GTAAAGTACC TATGAAGTCA GGCCCTGTGC CCACTCCCAG GATGCTACCA TGTATACTCA
  CTAGACCTTT TATTCTTTAG AGATGGTCTT TTCTGTCTAT ATCAAGCACA CCAAATTCCT
  AGGTAGCATG CAAGTATAAT CTAGTGATTA GAGAGGGACA TGAAAATCCC AATTATGGTG
  TGTGTGTTCT TAAAGGGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321008308	CHEV_3_145081916	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260652671					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145124707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			908 bp upstream
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
D530037P16Rik	RIKEN cDNA D530037P16 gene			374 bp upstream
Rr586779	regulatory region 586779			919 bp distal
Rr586780	regulatory region 586780			720 bp distal