rs260647943 SNP Detail

Summary

• ID
  rs260647943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141168857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAACCAAT CCTGACTGAA
  TACCAAGCAC GGATAAGGTT TTGTGTTAAC AGTGTGGGTT GGAAAGATCT GCAAGGCAGG
  GTGTCTGCTT TAAATGAGTT AAATCCTAAT TAGGAAAAAC AGCCAAAAGA CGGGTATAAC
  TAATAACTGC CCAATTCTAC AACTTTATGG TTGTTGTTGT TTGAGACAGG TTCTCTCTTC
  R
  TAGCCCTGAC CATTTTGGAG TCCCCAAGCT GGCTTTAAAC TTACAGTGAT TCTCCTGCTT
  CTGCCTCCTG AGTTCTGGGG TGACAAGCAT AGCCCACCAC ACCTAACACT TCACAACTTT
  GCAGTCTTGT TTACATAACA CTAACTCTGC ACAGAGATTT CTCTGACAGA CTTCAAGCTC
  TTATTCTTCT TTTGGGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320992364	CHEV_3_141126060	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260647943					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141168857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13884	CpG island 13884	1544 bp proximal
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	249 bp distal
Rr586319	regulatory region 586319	1630 bp proximal
Rr586320	regulatory region 586320	1886 bp proximal
Tssr1065	transcription start site region 1065	1599 bp upstream
Tssr35916	transcription start site region 35916	1479 bp downstream