rs260642842 SNP Detail

Summary

• ID
  rs260642842
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:69764204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagctctgt gtttgtagcc gtcctggtct
  atataccaag tctcagaaca gctggggcta caaaatagag agaaactgtc tcagaaaTCC
  AAGACAAAAC AAGTCTCCAA TTGGCCACAG CATATCAGGA TAACAGAAAT TACACACCTA
  W
  GTGTATGCTA ATATCTTTAC ATCTTGCAGA TGTTATTTCA CAACCAGGCA GTATCCATGA
  ATTTTCCTAA ACAATGTTAC CCTTAGCTAT TTTATGTTAT TCATAATTTA GAGTCTTATA
  TATATACCTA AATTTGATTT CAATTTTTTT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325671474	CHEV_18_69790787	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260642842					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69764204 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr540232	regulatory region 540232			393 bp distal
Rr540233	regulatory region 540233			542 bp proximal
Rr540234	regulatory region 540234			920 bp proximal
Tcf4	transcription factor 4			Intron
				Noncoding-Transcript-Variant