rs260638007 SNP Detail

Summary

• ID
  rs260638007
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152422856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGACACAT TTTCTTGGAC
  TTCTCTTTTG AAAGGGGTTT GGAAACGTGG TAGCCTGAAA ACGAGGTGGG GTAAGTCCGC
  TGTGTAAAAG GCTAGTGGGC AGCTTCTGGC TCACCACCCA TCCTGACTCT CAGGCCCAAG
  TGCCTTCGCG GGCAGGGTGG CGACCGCTGG CCCTGTCTGG GGTGTGCGCA GGGGGGTACC
  G
  CTTGGATTCT CCCTGCGCCT GGGCTATCGA GCTCCCGCAG CCAGCTCGGC CGTCGTGTCC
  CGGGTCGGGC GGGCACCTCG ACAGCTCCTG GCACCCGCCC CCCCCCCCAC TGCGCGCTCA
  CTGAGCTGCC CAAGACTAGT CCCCCCAACT TGTTCTCGGC TGTTAACTAG TCGCGCTGGC
  GTAACGATGG GATGGGGTTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434229	CHEV_4_151712508	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260638007					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152422856 () rs orientation: forward

Symbol	Name	Function Class
Chd5	chromodomain helicase DNA binding protein 5	252 bp upstream
Cpgi15412	CpG island 15412	within coordinates
Rr605852	regulatory region 605852	within coordinates
Rr605853	regulatory region 605853	499 bp proximal
Tssr40549	transcription start site region 40549	220 bp upstream
Tssr40550	transcription start site region 40550	318 bp upstream
Tssr40551	transcription start site region 40551	416 bp upstream
Tssr40552	transcription start site region 40552	515 bp upstream
Tssr40553	transcription start site region 40553	575 bp upstream