rs260626809 SNP Detail

Summary

• ID
  rs260626809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAATTCT ATTGCTACAT
  CACCTGCACA GCACAATCCA GTTGTCATGG TGTGCCACAT ATGAAAAGTC CTATTGAACA
  ATGCATATGC CTGTACTTGT GTAAGATAAA TGAAAAGAAA AAAAATTGTA GAGTAAGCCA
  GTCCACTAGG AGAGATGTAC AATTTGATTC TAAGAGAGGC AATTTTTTAT TTTCTTTCCC
  Y
  GTATTGAATG ATATAACGAG AGAAGGGAGC CTGTGAGAAA CTGTGCTTCT TTAATAGGAT
  GAAGGAGCGA CACTCTCTTT TAGAATCTAG AGAAAGTCCA CCGCTCAAAG CTGTGGTAAA
  ATTAACAATA ATTAACAAAC TATAATTATT TCCAGGCCCA CCTTCAAAAT ACATTTTATA
  TATATCAGCA TTTAATGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812342	CHEV_6_67486613	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260626809					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513603 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	743 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1807 bp distal
Rr631669	regulatory region 631669	1364 bp distal
Rr631670	regulatory region 631670	813 bp distal
Rr631671	regulatory region 631671	543 bp distal
Rr631672	regulatory region 631672	640 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	823 bp upstream
Tssr1872	transcription start site region 1872	1838 bp upstream
Tssr61255	transcription start site region 61255	1874 bp upstream
Tssr61256	transcription start site region 61256	1393 bp upstream
Tssr61257	transcription start site region 61257	922 bp upstream
Tssr61258	transcription start site region 61258	817 bp upstream
Tssr61259	transcription start site region 61259	749 bp upstream