rs260623155 SNP Detail

Summary

• ID
  rs260623155
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172343187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGCTGGG AGGCTGGGTT
  CCTCCTAGTG CTGGGAGGCT GAGTTCCTCC TAGTGCTGGG AGGCTAGGTA TCTCCAGGCA
  TTTCAGAGGG GCAGGAGGAA GGGGAGGACA GGGAGTGGCA GAAAGCCAGT GTCCCCCCCT
  GGAGATATGC TTAACTGAGA AGCCAGACTT TAATAGCTCT GCTGGACTCT GTCTCCCAGG
  Y
  TCCTCCCACT AAATGTGCTT ACTCATCAGA GTCAAACTTC CTGCATCTCC TGCCTCAGCT
  AGTGTTGGGG CTCAAGGGCC AGCAGGGTGA TTGGCCAGGC ACTCTTCAGG GTTCCAAGGG
  ATGAAAAGGC TGTTTCAGGG TCAAGTCCAA ACCAGAACGA ACAGGCTGGG CTTGCCTTCA
  TGCCTCTCCT GGATTCTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352407846	MGP_WTSI_1_174445751	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260623155					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352407846	MGP_WTSI_1_174445751	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172343187 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	773 bp downstream
Gm57108	predicted gene, 57108	1606 bp upstream
Gm70635	predicted gene, 70635	within coordinates
Rr396591	regulatory region 396591	1286 bp downstream
Rr423603	regulatory region 423603	1617 bp distal
Rr423604	regulatory region 423604	1482 bp distal
Rr423605	regulatory region 423605	946 bp distal
Rr423606	regulatory region 423606	within coordinates
Tssr302	transcription start site region 302	1608 bp upstream
Tssr10236	transcription start site region 10236	1473 bp downstream
Tssr15228	transcription start site region 15228	1640 bp upstream