rs260621955 SNP Detail

Summary

• ID
  rs260621955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83750937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCTGGAG AAGGCCAAAG
  TAGACGAGGT TGGTGAAAAG GCCCACGCCA ATCATGCTGG TGGGGAAACG CTCAAAGACG
  TAGAGGCCGA TCAGCACTGC TGTGGAGAAC TAAAACAGGC AGAGGCGCTG GCTCAGGGGA
  CCTTTAGGCC TCCGGGACAG TCAGTCCCTG CCTGCTCTGC ACAGCGCTGT TACAAATGCA
  Y
  TTTGGTTTTC TCGGTTCACA GAAACCACAC TCAGCTTTCA AAAAGGTGGT CTCTCTGAAG
  GCCACTTCTA AAACATTTTA GACAGTGATC CAAAGTAAGA AAAAAAAAAC ATTTTATACA
  GCACTCCACC AAACACATAC CCAACGTGTG ACAGAGCGCA CACTCACTTT GCCTGCTCTC
  GTTTTTACTG TTAGCACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369039035	MGP_WTSI_6_83723949	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260621955					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369039035	MGP_WTSI_6_83723949	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83750937 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17617	CpG island 17617	1110 bp proximal
Gm52907	predicted gene, 52907	1930 bp upstream
Rr632937	regulatory region 632937	291 bp proximal
Rr632938	regulatory region 632938	1714 bp proximal
Rr632939	regulatory region 632939	1848 bp proximal
Rr632940	regulatory region 632940	1941 bp proximal
Tex261	testis expressed gene 261	Intron
Tssr1911	transcription start site region 1911	1973 bp upstream
Tssr57375	transcription start site region 57375	1683 bp upstream
Tssr61705	transcription start site region 61705	1605 bp downstream
Tssr61706	transcription start site region 61706	1620 bp downstream
Tssr61707	transcription start site region 61707	1627 bp downstream
Tssr61708	transcription start site region 61708	1655 bp downstream
Tssr61709	transcription start site region 61709	1714 bp downstream
Tssr61710	transcription start site region 61710	1791 bp downstream
Tssr61711	transcription start site region 61711	1812 bp downstream