rs260618877 SNP Detail

Summary

• ID
  rs260618877
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152079981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCTCCCG CCCGCAGCTG
  CGACACGGTG GACCCCTCGG GCCCCGCCCC GCCCCCGCCG CACACCCCGC ACCGCGACCC
  CTGCCCCGAG GCGCTGCGCG GGGGCCGCTC CCCGGAAGGA GGGGGAGGGG CGGCGCGGGA
  GACCGGCTCC GGAGTACCGA CCCCCCGGAC GCGGGCGCCG TGGGGGCGGG GCGCGGCCTG
  S
  CCGGCGGAGG GGGCGGCGGG ACCGCGCGCC TGGCCGTTCC AAGGGGGCCG GGCCGCACCG
  GGGAAGTGGG GAGGAGACCC CGCGAACCGA GGCGGGCCGG CGGAGGGCCA TGTCCTCGGG
  GCGGAGGGTG GGCGCGGCGC CCGGGAGGCA CCGGCGGGGA GCAGAGGCGC GGGCCCCAGC
  TGGGGGCGCC GGGCGAACGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss363702611	MGP_WTSI_4_151369633	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs260618877					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363702611	MGP_WTSI_4_151369633	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152079981 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15382	CpG island 15382	within coordinates
Gm69399	predicted gene, 69399	609 bp upstream
Phf13	PHD finger protein 13	Intron
Rr398892	regulatory region 398892	664 bp upstream
Rr605702	regulatory region 605702	119 bp proximal
Rr605703	regulatory region 605703	620 bp proximal
Rr605704	regulatory region 605704	724 bp proximal
Rr605705	regulatory region 605705	1198 bp proximal
Tssr44799	transcription start site region 44799	589 bp downstream