rs260613116 SNP Detail

Summary

• ID
  rs260613116
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138109732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAGCTA TTTCTTTGTA
  TTCTTCTAAC ATTACCCATA ATTATTATAT TTCACATTTA TGATAGTTTC TCTAGCTATT
  TCTATTCTCT CTCTCTCTCT CTTTATTATT GAGATGTGTT CTCATGTAAG ACCGGATGGA
  CTCGAGCTTC TTATCTAGTT GAAGTTGGCC TGGAAAAATT TTAAAAAGAT TTTATTTATT
  W
  ACTTATTTTT ATTTTGAGTT AGTACCTCAC TATGCCTACC TAAGCTGCCT GGAACTCACT
  ATGTAATCAA GGCTGGCTTC AAACTTACAG AGATCTGCCT GTCTCTGCCT CCTGAAGGCT
  AGAATGAAAG GTATGGACCA CCGTGCGTGA CTTGGTTTTT TTTAATCTTA CGCATATGAA
  GAATGTTTTG CCTGCATGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321372973	CHEV_4_137938336	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260613116					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138109732 () rs orientation: forward

Symbol	Name	Function Class
Rr602902	regulatory region 602902	1932 bp distal
Rr602903	regulatory region 602903	229 bp proximal
Rr602904	regulatory region 602904	1299 bp proximal