rs260552707 SNP Detail

Summary

• ID
  rs260552707
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54822398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG AGGGAGTGTT GCTTTTTCTT
  T
  GGTCTTAATG AGAACTCAAA CATTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320773080	CHEV_3_54718899	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260552707					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54822398 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13182	CpG island 13182			425 bp proximal
Gm31358	predicted gene, 31358			1042 bp upstream
Rr576863	regulatory region 576863			within coordinates
Rr576864	regulatory region 576864			44 bp proximal
Rr576865	regulatory region 576865			843 bp proximal
Rr576866	regulatory region 576866			900 bp proximal
Rr576867	regulatory region 576867			905 bp proximal
Rr576868	regulatory region 576868			1041 bp proximal
Sertm1	serine rich and transmembrane domain containing 1			Intron
				mRNA-UTR
Tssr33288	transcription start site region 33288			837 bp downstream
Tssr33289	transcription start site region 33289			890 bp downstream
Tssr33290	transcription start site region 33290			1008 bp downstream