rs260552086 SNP Detail

Summary

• ID
  rs260552086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23925101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGTCAGA CCACCCCCAC
  CCCACCCCAC TCCACCCCAC CCCACCTCAC CCCCGCCCTC TCCCAACCCC ATCTCTGAGA
  TAGGGTTTCT CTGAATAGTT ATGGCTGTCT TGGAAGACTA GGTTGACATT AAACCCTCGC
  CACCTCTAGG CCTCTTCTCA AAATCTTTCA AGTCTTTCCG TCTATATTCG TTGTTAAGGG
  R
  ACTGAACGTG CTAGCAGTTA TTCTACCACT GAAATGTGTC CCTGACAATG TATTTGAAGA
  TATTGTTAGT ATCCCAACAC TCAGAGAAAA GCTTCTTGGT ATTTTTATTG AGATTGTGTT
  AAAGCACATT TGTGGAACTA GCAGTTTTCT TATGTAAAAA CAAACATGTT ATCTATCTAT
  AGATCTTTGA ATTTTCTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387989044	MGP_WTSI_13_23832987	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260552086					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387989044	MGP_WTSI_13_23832987	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23925101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	1056 bp distal
Gm60901	predicted gene, 60901	1183 bp upstream
H1f2	H1.2 linker histone, cluster member	1587 bp downstream
Rr369656	regulatory region 369656	580 bp downstream
Rr388130	regulatory region 388130	538 bp upstream
Rr475931	regulatory region 475931	1932 bp distal
Rr475932	regulatory region 475932	693 bp proximal
Rr475933	regulatory region 475933	1194 bp proximal
Tssr118855	transcription start site region 118855	1920 bp downstream
Tssr118856	transcription start site region 118856	1183 bp downstream
Tssr118857	transcription start site region 118857	943 bp downstream
Tssr118858	transcription start site region 118858	1183 bp upstream