rs260543429 SNP Detail

Summary

• ID
  rs260543429
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38107002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCCATTG GGGTCACGAG
  AAAACACAAA GGAGTAGCTG TCTGCACAGG TGCCATCCAG ATTCTGCAGG CGGCAGGAGT
  ACTGCAGAGC GAAGGTGTCG TAGTCCGTGT CGATGATCCA GTGGTCATCG TCTGTAAGTC
  AGAGAGACAC AGTGGCCCCA GAGACCTGAC CAACTTGCTA CCACTGCTGC CATGGAACTC
  K
  CAGCCTTTCC TTAGTGAAAG GAGGCTGCAG AGATTCCTGA CAGCTTCTGG ACAACTGGGC
  AAGCGAGAAA GGATCTTGCT CTCTTCCCGG AAAGGTGTCC TGGCACAGAA GGCATGTCCT
  TCATGTCAGT GTTTCCTTGG TAGCAGAAGA CACAAATCTT GTCCTGGTAT AGAGGGCACC
  TCATTCTCGT CGTCAGCTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402412039	MGP_WTSI_19_38193044	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260543429					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402412039	MGP_WTSI_19_38193044	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38107002 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10802	CpG island 10802	670 bp proximal
Rbp4	retinol binding protein 4, plasma	Intron
Rr547239	regulatory region 547239	1359 bp proximal
Tssr156244	transcription start site region 156244	1792 bp downstream
Tssr156245	transcription start site region 156245	220 bp downstream
Tssr159111	transcription start site region 159111	1753 bp upstream
Tssr159112	transcription start site region 159112	1703 bp upstream
Tssr159113	transcription start site region 159113	1638 bp upstream
Tssr159114	transcription start site region 159114	235 bp upstream
Tssr159115	transcription start site region 159115	179 bp upstream
Tssr159116	transcription start site region 159116	77 bp upstream
Tssr159117	transcription start site region 159117	63 bp upstream