rs260511341 SNP Detail

Summary

• ID
  rs260511341
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79528141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGCACA CGTGTGTGGG
  TACCTGTGTG TACATGTATG CATAGTCATG AAGAGGTGAG AGGCCAATCA CCTTGGTTTT
  TATTCTATCT TTAGTTTGAG ACTGGGTTAC TCAGTGGTCT GAAATTTTGC CAAATATGCT
  AGATTATCTT ACCATTGATT TCCAAGGGTC CATCTTCACC TGCCCTTATC ACCAACACTC
  R
  GATCACAAGT GGGCGCCACT GGGCACAGCC TTTTCTGTGG TGTCTGGGCA TCCAGACTCA
  GGCTTTTATG TTTGAGAGGC AAGTGCTCTA CTGCCTAAGC CTTTGCTCCT GCCCCCAAAT
  TACTTTTCAA CTGGGAAAAA CAAAAACTAA AACATGTATG AGCACACTCC TGTGAAAGCT
  TAGAAGACGA CTTAACAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320361099	CHEV_2_79537954	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260511341					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79528141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11846	CpG island 11846	1589 bp distal
Rr560025	regulatory region 560025	1484 bp distal
Rr560026	regulatory region 560026	within coordinates
Rr560027	regulatory region 560027	456 bp proximal