rs260502555 SNP Detail

Summary

• ID
  rs260502555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156955318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCCCATCA CTCCAGAGGC AGAGGCAGGA AGATCTCTGA
  GTTTGAGACC GGTCTGAATT ACACAGCAAG ATCCAGACAG CAAGGACTAC AAAGTGAAAC
  Y
  CTGTCTCAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AATCTTCAAG CAATTGCAGA
  GTGCTTTTAG GTTTAACAGA GACACTTTAT TTACAGAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584232	CHEV_2_156939134	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260502555					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156955318 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	1541 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27139	transcription start site region 27139	1698 bp upstream
Tssr27140	transcription start site region 27140	863 bp upstream
Tssr27141	transcription start site region 27141	534 bp upstream
Tssr27142	transcription start site region 27142	4 bp downstream
Tssr27143	transcription start site region 27143	879 bp downstream