rs260470336 SNP Detail

Summary

• ID
  rs260470336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75773890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTGCGGA GGTGGGAGAG
  AGGATGTGGG AGTTGGGGAT CTTGTTATAG AACCCTGAGC TGTCCTTGAA CCTCTGGGAT
  GGGAGGAACT CCTATCTGTC TGCATTGTGG ATAGTCAAGG ACACTCCTAA GCAGGGAGAC
  TGGAGAGGTA TTTGCAAGTG GTCCCCTGGG ACCTAAAACC TCAAGAGGAG CCTATTGTCT
  Y
  TGCCCACAGG AACATCTGTG TCTTTTCTCT TCTTATTTTG TCCTTGAGTT CTTTTTTCTG
  CACTCAAATG GGGTGGGGTG GGGATCTCAA GCGCTCGGGG AGTGGGGGGG GGGCAACTCT
  CACATCCTGT CTGTGACCTT TCCCTTCTTG CTGATGTAAC TTCTTAGTAA CCGCCAGATC
  CTGGAAGAGG AGTCCTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380934144	MGP_WTSI_10_75400801	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260470336					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380934144	MGP_WTSI_10_75400801	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75773890 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10			309 bp downstream
Cpgi1737	CpG island 1737			1616 bp distal
Gm867	predicted gene 867			mRNA-UTR
				Noncoding-Transcript-Variant
Rr384937	regulatory region 384937			within coordinates
Rr434185	regulatory region 434185			within coordinates
Tssr94151	transcription start site region 94151			1797 bp downstream
Tssr94152	transcription start site region 94152			1764 bp downstream
Tssr94153	transcription start site region 94153			1734 bp downstream
Tssr94154	transcription start site region 94154			1723 bp downstream
Tssr94155	transcription start site region 94155			1639 bp downstream
Tssr94156	transcription start site region 94156			882 bp downstream
Tssr94157	transcription start site region 94157			861 bp downstream
Tssr94158	transcription start site region 94158			723 bp downstream
Tssr98154	transcription start site region 98154			332 bp downstream
Tssr98155	transcription start site region 98155			1908 bp downstream
Tssr98156	transcription start site region 98156			1948 bp downstream
Tssr98157	transcription start site region 98157			1984 bp downstream