rs260462108 SNP Detail

Summary

• ID
  rs260462108
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:9096265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTTTCAG TGTTCTTGTA GAAAGGCAGC
  CTTTCTCAAA TTGTTGTTTA TCTCAGTGGC CTTACTATTC AAGATACTAC ATTGCATCAT
  AAAATATAAC TTAAAATACT GTCATCTCTT TTATTTCCCC CTCAGATTGA CTACACAAGA
  M
  ATTTTTAGTG AATCAGGACT TTCTATATTA CTTGAATGTA AAAAGAGGTT TCTGTATTTT
  AAAAACAGGT CATTTCTCAT TGTGATGAtt tttttttttt tttttttttt tttttttttt
  tttttACTGC TGGGAAGCCA GTAGTGTTCA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321738848	CHEV_6_9046265	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260462108					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9096265 () rs orientation: forward

Symbol	Name	Function Class
Nxph1	neurexophilin 1	Intron
Rr626465	regulatory region 626465	1098 bp proximal
Tssr54933	transcription start site region 54933	124 bp upstream