rs260444095 SNP Detail

Summary

• ID
  rs260444095
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79289324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAACTCAAA ACAAAAACAA AACACCAACA
  CCAAAACCCC TAGCAATCAG ACAGGGTAAG ATGTTAATAT ACATGGGAGT TCTACCCAAT
  CCTTGTTTTG TCAAGACTTG AAAAACCAAA TGGAATTGTG GAGGAGCCAC TTGGACAAAA
  W
  CCTGCCAGCA GTTTCTCAGG TCTGGACTTC AGTCTTCAGC CATATCTCCT CTTGCCCCTG
  GGTGGACACT GAACAAATCA ACTATCCACA CTGATTGACT GTCCCATCAG AATTGATCAT
  AGAATCCTTC CATAGCAGCC CAGGCCTCTT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320811400	CHEV_3_79185939	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260444095					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79289324 () rs orientation: forward

Symbol	Name	Function Class
Rr578510	regulatory region 578510	1508 bp distal
Rr578511	regulatory region 578511	348 bp distal
Spmip2	sperm microtubule inner protein 2	Intron