rs260424621 SNP Detail

Summary

• ID
  rs260424621
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68952947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCCCGAC CCTGCCAGAA
  AGTTCTGTAA CCAAACATGG GGAAGGGGCA GAGAAGAGGA GCCTTAGCAC TAAGGCAGCT
  CCACGCTGAC CGGCAGCGCT ACTCAGGATT TATGAACTGT TATTCATGCG CTCTATAGAT
  GATAGTGTTG GTCTGGAAAA GAAAGACTAG AAATTACAAT TCAAATACAG GCACCAAAGC
  K
  TAAAAGTCGT AAACCTAAAA ACCTCATGTG TTGGGGCGTC AGCCTTCGAA AACTTTGGGC
  TGAAAAAAAA AAATCAGCTG CTTTGGGTGT CTTCCATTAC GATATACACA CTCCCAATAC
  TCCCTTTGTG ATAGAGTATT GAGAAACGGG ATAAAGGATG GGAAATACGT GGTTTTGTTA
  CAGGTATAAT ATCGGAAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358314024	MGP_WTSI_3_68849536	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260424621					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358314024	MGP_WTSI_3_68849536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68952947 () rs orientation: forward

Symbol	Name	Function Class
Gm65005	predicted gene, 65005	within coordinates
Rr578118	regulatory region 578118	870 bp distal
Rr578119	regulatory region 578119	482 bp distal
Rr578120	regulatory region 578120	711 bp distal
Rr578121	regulatory region 578121	within coordinates
Rr578122	regulatory region 578122	250 bp distal
Rr578123	regulatory region 578123	894 bp proximal
Trim59	tripartite motif-containing 59	872 bp upstream
Tssr29529	transcription start site region 29529	527 bp downstream
Tssr29530	transcription start site region 29530	478 bp downstream
Tssr33523	transcription start site region 33523	955 bp upstream
Tssr33524	transcription start site region 33524	947 bp upstream
Tssr33525	transcription start site region 33525	851 bp upstream
Tssr33526	transcription start site region 33526	640 bp upstream
Tssr33527	transcription start site region 33527	615 bp upstream