rs260381230 SNP Detail

Summary

• ID
  rs260381230
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129186186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCCTGGA GTTAGAAGAC
  AGAGTTGCAG GTGGTTGTGC TGGGACCCGA ACTCTGGTCC TTTGCAGGGG CAGCCAGTGC
  TTTTTTACCA CTAAGTCACC TCTCCAGTCT CAACCCTGCC ACTTTAATGC CTACTCATTT
  ATTGTGTGTG TGTGTTTCTG GGACAACCTG TAGAAATCAG TTCTCTCCAT TTGGAAGCCA
  K
  GGATTGAACT CAGTTTATCA GATTTGGTGG CAAGTGCCCT TATCTGCTGA GCCACTCACT
  GAATCCCCCC TATTTTGTCA GGGAGTGGCA GATTCTCACA AAACCAGGTT GGCCTTCAGC
  TCACTAAGTA GCTGAGGCTG GCCTTGCATT TCTGACCCCC CTCCCTCAGC CTGTTGGGAT
  TACAGGCAGG CACCAGCACG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321311667	CHEV_4_128969637	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260381230					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129186186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14888	CpG island 14888	1010 bp proximal
Sync	syncoilin	Intron