rs260365541 SNP Detail

Summary

• ID
  rs260365541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170834473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTATATAG TCATAGATAA
  GCATGGAAAT GTCACACGAC ACCCTAAGTA CATACTGCTA TGAAATAGAA TGTGTCGGAG
  GGGGGCCCAT GCCGAGGTAT GCCCACCAGA AATTACCCCA TGCAACAGAC CTGGTGTGAA
  AAGGTTAGTC AGGGAAGGGG AGAGGAGTGA GGACCTGGAA AGAGATAGAG GCAGACAAGT
  R
  GACATGTAGA CAGACAGAGA GACAGACAGA CAGACGGGTG GCCCTGCTCA CTCCAGCCCA
  TAAGTACACT GTAGCTGGCT TCAGACACAC CAGAAGAGAG TGTCAGATCT CATTATGGGT
  GGTTGTGAGC CACCATGTGT ATGGGTGTTT CATCTGCATG TCTATATGTA GACCATGTGC
  ATGCACTGCC TGTGGAGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320115580	CHEV_1_172937035	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260365541					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170834473 () rs orientation: forward

Symbol	Name	Function Class
Rr423182	regulatory region 423182	240 bp distal
Rr423183	regulatory region 423183	195 bp proximal