rs260351943 SNP Detail

Summary

• ID
  rs260351943
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108704243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTGTGCTT GCTGTTGTAA AACAGATCCT
  AAGTCTCATG ACACGGGGGT CTCAACTCAA GCTTTCTGCA GGAGGATTGC CAAGTTTAAT
  TAAAAAAAGA TACCCAGCTA AATTTAAATT TCACACAAAG GAAAATTAAA TATGCCCATG
  C
  AACTTATGCA ACTTTTTAAA AATCTCAAAA TCAGATTTAA TTGGAAAATC TTCATTGTAT
  TTGGCGACTC TATCCACGAT GGAAATTTCA ATTATTCTTT CAAGTTCAAA ATCAAGTTCG
  CTCCGAGGGT ATAGTGCTGA GGCATAGAGC                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321252967	CHEV_4_108519651	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260351943					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108704243 () rs orientation: forward

Symbol	Name	Function Class
A730015C16Rik	RIKEN cDNA A730015C16 gene	353 bp downstream
Cpgi14566	CpG island 14566	698 bp proximal
Kti12	KTI12 homolog, chromatin associated	811 bp upstream
Rr398384	regulatory region 398384	623 bp upstream
Rr597229	regulatory region 597229	590 bp distal
Rr597230	regulatory region 597230	435 bp proximal
Tssr38317	transcription start site region 38317	781 bp upstream
Tssr38318	transcription start site region 38318	851 bp upstream
Tssr42741	transcription start site region 42741	1310 bp downstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	Intron