rs260339362 SNP Detail

Summary

• ID
  rs260339362
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89263218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCC AGGTGGAACA TAATGAGGGG
  S
  GAGAGAGAGA GAGAGAGAGA GAGAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321851867	CHEV_6_89236230	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260339362					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89263218 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	511 bp upstream
Rr379731	regulatory region 379731	217 bp downstream
Rr379732	regulatory region 379732	1253 bp upstream
Rr634092	regulatory region 634092	126 bp distal
Rr634093	regulatory region 634093	25 bp distal
Rr634094	regulatory region 634094	101 bp proximal
Rr634095	regulatory region 634095	587 bp proximal
Rr634096	regulatory region 634096	1830 bp proximal