rs260332078 SNP Detail

Summary

• ID
  rs260332078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82938976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGAGATA AAGAGCTCCT
  GATTGGAAAG GAGAAAGTCA CCTCTTCTGG CACAAGCACC ACACATCGTT CATGCTCTAA
  AACCATTACC AAGACTGTCA CAGGTCCTGA TGGTCGCCGA GAAGTGGTCA AAGAAGTGAT
  CACCTCGGAT GATGGCTCAG ACTGTGGCGA TGCCACCGAG TTAGACATAT CCCACAGTTT
  Y
  AGCGGCAGTC TCGACGAACT CTCTGAAAGG CATCCTGACC TTTCTGGGTT TTTTGACAAC
  CACTTTGGTT TAATCTCACC TAACTTCAAA GAATTTGGCA GTAAGACCCA TTCTGATTCC
  GACATCCTCA CAAACATTGA GGACCCCAGC TCCCATGTAC CTGAGTTTTC TTCCAGTAGT
  AAAACCTCAA CTGTCAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358676708	MGP_WTSI_3_82835591	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260332078					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358676708	MGP_WTSI_3_82835591	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82938976 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Coding-Synonymous
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	29 bp upstream
Tssr29668	transcription start site region 29668	1460 bp downstream
Tssr29669	transcription start site region 29669	1410 bp downstream
Tssr29670	transcription start site region 29670	1373 bp downstream
Tssr29671	transcription start site region 29671	824 bp downstream
Tssr29672	transcription start site region 29672	731 bp downstream
Tssr29673	transcription start site region 29673	684 bp downstream
Tssr29674	transcription start site region 29674	650 bp downstream
Tssr29675	transcription start site region 29675	644 bp downstream
Tssr29676	transcription start site region 29676	630 bp downstream
Tssr29677	transcription start site region 29677	615 bp downstream
Tssr29678	transcription start site region 29678	540 bp downstream
Tssr29679	transcription start site region 29679	481 bp downstream
Tssr29680	transcription start site region 29680	457 bp downstream
Tssr29681	transcription start site region 29681	355 bp downstream
Tssr29682	transcription start site region 29682	324 bp downstream
Tssr29683	transcription start site region 29683	293 bp downstream
Tssr29684	transcription start site region 29684	254 bp downstream
Tssr29685	transcription start site region 29685	208 bp downstream
Tssr29686	transcription start site region 29686	119 bp downstream
Tssr29687	transcription start site region 29687	66 bp downstream
Tssr29688	transcription start site region 29688	41 bp downstream
Tssr29689	transcription start site region 29689	17 bp downstream
Tssr29690	transcription start site region 29690	2 bp upstream
Tssr29691	transcription start site region 29691	48 bp upstream
Tssr29692	transcription start site region 29692	64 bp upstream
Tssr29693	transcription start site region 29693	95 bp upstream
Tssr29694	transcription start site region 29694	128 bp upstream
Tssr29695	transcription start site region 29695	154 bp upstream
Tssr29696	transcription start site region 29696	167 bp upstream
Tssr29697	transcription start site region 29697	191 bp upstream
Tssr29698	transcription start site region 29698	328 bp upstream
Tssr29699	transcription start site region 29699	410 bp upstream
Tssr29700	transcription start site region 29700	423 bp upstream
Tssr29701	transcription start site region 29701	455 bp upstream
Tssr33800	transcription start site region 33800	546 bp upstream
Tssr33801	transcription start site region 33801	183 bp upstream
Tssr33802	transcription start site region 33802	59 bp upstream