rs260315186 SNP Detail

Summary

• ID
  rs260315186
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132291357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATCAGCC GTTCTCCCTC
  CCTCTACCCC TCTCGCCTTC TCCCCTCCTT TCTGACTCTC TTTCCCTCTC CTCGTGCCAA
  CTGTTTGTTG CTTCTTTTGG TTCTCTCTGT GTGTCTCTCT GTGTCTCTGT GTGTCTCCCT
  CTCCTCCCCC ACCCCGCCCC TTTCCACACC CCCTGTCTGA CACCCTCTCT GTCCTTTGCT
  K
  GCTCTGCAGG AAACCTCTGC AGTACTGAGT CTGGCTGGCT CAGTCCGTGT GGAGGTTCCT
  GTGGCATCTG GTGGAGGGGC CCTGGGTCAC TGTGTTTCCT CCCAGGGGTG ACTTGGCAGT
  GCTTTGCTCT GTTTCCTCAC TTCTGCAATT GCCAGGCCAC AACACAGAGG CTCGAGCTGA
  GGCTTGGACC AGGAGGGAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363296950	MGP_WTSI_4_132119961	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260315186					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363296950	MGP_WTSI_4_132119961	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132291357 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	21 bp upstream
Rr601015	regulatory region 601015	within coordinates
Rr601016	regulatory region 601016	32 bp proximal
Rr601017	regulatory region 601017	58 bp proximal
Rr601018	regulatory region 601018	213 bp proximal
Rr601019	regulatory region 601019	1445 bp proximal
Tssr39381	transcription start site region 39381	565 bp downstream
Tssr39382	transcription start site region 39382	536 bp downstream
Tssr39383	transcription start site region 39383	453 bp downstream
Tssr39384	transcription start site region 39384	418 bp downstream
Tssr39385	transcription start site region 39385	309 bp downstream
Tssr39386	transcription start site region 39386	5 bp upstream
Tssr39387	transcription start site region 39387	36 bp upstream
Tssr39388	transcription start site region 39388	137 bp upstream
Tssr39389	transcription start site region 39389	1314 bp upstream