rs260245194 SNP Detail

Summary

• ID
  rs260245194
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108287478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tccaggtct gtgtagggga tattcccagc
  acccagaagt cttcctcatt tcaccttcta gctcctgcca ctccGATTCT GACAATGTGG
  ACCAGTTTAC CTTTGCTCAT CCACTGGAGT CATGTAGATG CACTAGATAT ACCCCTCCCC
  Y
  CCCCCCCCCC CCGCCCTGCT TCTCTTACCC ATTCAACATC CATTCACAGT ATTGCTTACT
  TTTGTGTATA GTTGTAGATT ACTCATTTTC ACTGGATACA TTTTTTTTTT TTTTTTtttt
  ggtttttcaa gacagggttt ctctgtgtag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321252518	CHEV_4_108102886	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260245194					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108287478 () rs orientation: forward

Symbol	Name	Function Class
Gm40223	predicted gene, 40223	1024 bp upstream
Rr597184	regulatory region 597184	1960 bp distal
Rr597185	regulatory region 597185	604 bp proximal
Rr597186	regulatory region 597186	1107 bp proximal
Tssr38291	transcription start site region 38291	1094 bp upstream