rs260171716 SNP Detail

Summary

• ID
  rs260171716
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34073130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTGGGG AACAGCAACA
  AGCACAAGTG CTTTTTATTT TTACTTATTT ATTGTTGTTT GTGATGAAAA TGTTTTATAC
  TGATCCTGGT GATAGACGCT GAACTGTACA TTTTTAAAAG GGCTAATCTT GTATAAAGAA
  AATGTACTTT ATACAAACCA GGTTGCTAGG GGCCAGGAGC TCACACCAGT AAAGCCAGCA
  S
  TCTGGAGGCT AAGACAAGAG AATGGGAGGT AAATCGAAGG CCATCTTGGA CTGCTTAGTG
  AGACTTGTCT CAGAGTAACA GGTAACCGTG GGGGAACTGA GCCTGTTAGC CCAACTGGCA
  CCTGGAGGTG GGAGGCAGGG TGGTCAATTT GAGCTCCAAA TAAAGGAAAG ACAAATACAT
  CATGCGTCGC TGAAAAGTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357502376	MGP_WTSI_3_33917903	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260171716					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357502376	MGP_WTSI_3_33917903	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34073130 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	473 bp proximal
Fxr1	FMR1 autosomal homolog 1	1003 bp upstream
Gm43077	predicted gene 43077	within coordinates
Rr575095	regulatory region 575095	287 bp proximal
Rr575096	regulatory region 575096	807 bp proximal
Rr575097	regulatory region 575097	1138 bp proximal
Tssr28785	transcription start site region 28785	888 bp upstream
Tssr28786	transcription start site region 28786	920 bp upstream
Tssr28787	transcription start site region 28787	936 bp upstream
Tssr28788	transcription start site region 28788	951 bp upstream
Tssr28789	transcription start site region 28789	966 bp upstream
Tssr28790	transcription start site region 28790	1094 bp upstream
Tssr28791	transcription start site region 28791	1102 bp upstream
Tssr32968	transcription start site region 32968	816 bp downstream