rs260135080 SNP Detail

Summary

• ID
  rs260135080
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137563377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCAGGTA GCCCTGCCAG
  CCTGTTTCAT TCCCTAGCCC CTCCCACACA GATCAGCCTA GACTCTGTCC GCTCCTTTCT
  CCTCCCTAGC GGTTACATTC TTAAATCGAG CTGTTTCTTC GTCCACTTCC GCTACAGAGC
  CCCTGAACTC AAGTGTGGTA CTTATTTCCC TTCTGGCTCA TGAGCCACAC AGATCAGCCT
  A
  GTGGCAGCTT CAGTCTTGTC CCCTGCATTG CTCTCTGGGT ACCACAGCGC AAGGCTGCTC
  CGGTGTTCCT GTGTAGGTAT CTGCTGCCCC TGCTGGTCAG TTTGTTATAA ACACAGACAG
  CTTTCCAGGT CACCCTTCCC AACATTCAAC ATGGGGACGG GGTGGGAGGA GGGAGGCGTT
  GACAGCCAGA CCAGACCAGA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	WSB/EiJ
ss363424950	MGP_WTSI_4_137391981	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	WSB/EiJ
rs260135080					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363424950	MGP_WTSI_4_137391981	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137563377 () rs orientation: forward

Symbol	Name	Function Class
Rr602734	regulatory region 602734	within coordinates
Rr602735	regulatory region 602735	80 bp proximal
Rr602736	regulatory region 602736	1774 bp proximal