rs260127328 SNP Detail

Summary

• ID
  rs260127328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93291807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACGTTGA TGGCTGGTGT
  CAGTTTCTGA CTCTGATGAG GTCAGGGATG GGACAGCTGC AGTTACCCAC AAGCCTTCCA
  AACCAAGCCA AACCCCAAAG ATGGGTTCAT TTCCCAGAAG GAAGACAGCA CACCACCTGC
  TCACTGACAT CTCAGGAGCT TTGAAGTGAG GCTTCTGGGC ACCCAATGGC CTGTCAGGCA
  Y
  GGTACACATA GTTTCACTTA ATTCTTGCTA CTACTGTTTG GCCATTGCTC CCCAAGTTAC
  AGATGAGGAA ACTAAGGTTT GGAGGGGAGT GGAATCCAAT TAGGCTGAAT CCCAAAGCCT
  AAATCCTTGG CACAGCCAGG ACCCAGGACA CACCCCACCA TCAGAAGTGG AGCCCCTTCT
  GCACAAATAC CTAATCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss354855724	MGP_WTSI_2_93301619	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	C	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs260127328					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	C	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354855724	MGP_WTSI_2_93301619	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93291807 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd82	CD82 antigen			Intron
				Noncoding-Transcript-Variant
Cpgi11945	CpG island 11945			475 bp proximal
Gm10804	predicted gene 10804			within coordinates
Rr397140	regulatory region 397140			376 bp upstream
Rr397141	regulatory region 397141			873 bp upstream
Rr561206	regulatory region 561206			1393 bp distal
Rr561207	regulatory region 561207			within coordinates
Rr561208	regulatory region 561208			939 bp proximal
Tssr18996	transcription start site region 18996			1579 bp downstream
Tssr18997	transcription start site region 18997			84 bp downstream
Tssr18998	transcription start site region 18998			563 bp upstream
Tssr25293	transcription start site region 25293			482 bp downstream
Tssr25294	transcription start site region 25294			901 bp downstream
Tssr25295	transcription start site region 25295			927 bp downstream
Tssr25296	transcription start site region 25296			995 bp downstream