rs260108293 SNP Detail

Summary

• ID
  rs260108293
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103628546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCGTGGGG TGGGTGGTGC
  AATCCCAGCT TCTAGAATTC CTTCTGTATG GAGAGCATGC AAACTCACCC TAAAAGGTCT
  GAGAAAAGGC AACTTGCCAC ATAATAATTA TACAATAACC TAGGCATGGA GAATGAACAT
  CCTTCATGGC TTTTTGATCT CCTTAATTAC CCCAGTCATG TTAAAAACCC GTCTTCTCCT
  M
  CCCTGAGATA GATAAGTACG CCCTATCAGG AATTACTTAT CTTTACCCGA TTTGTTTAAG
  ATTTTACCCA AAACTTTAAA GACTATGCAA GATGCCGGGA GGGGGTGCGA GGGGGGCACT
  TTTTTGTCCA GGAGAATTAT TTGGGGGGCG GGGGGGTGGT CAAAGAGGGT GGATAACGAG
  TAAAAGGAAA AAATGAGTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355100003	MGP_WTSI_2_103638358	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260108293					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355100003	MGP_WTSI_2_103638358	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103628546 () rs orientation: forward

Symbol	Name	Function Class
Caprin1	cell cycle associated protein 1	600 bp upstream
Cpgi11985	CpG island 11985	77 bp distal
Gm75184	predicted gene, 75184	within coordinates
Rr373619	regulatory region 373619	within coordinates
Rr561932	regulatory region 561932	841 bp distal
Rr561933	regulatory region 561933	563 bp distal
Rr561934	regulatory region 561934	62 bp distal
Tssr586	transcription start site region 586	627 bp upstream
Tssr25500	transcription start site region 25500	1223 bp upstream
Tssr25501	transcription start site region 25501	1113 bp upstream
Tssr25502	transcription start site region 25502	589 bp upstream
Tssr25503	transcription start site region 25503	539 bp upstream